Providing a definition for the deprecated _symmetry_cell_setting
James Hester
jamesrhester at gmail.com
Thu Apr 6 06:54:22 BST 2017
Dear Core DMG,
A sharp-eyed reader of the new DDLm core_CIF dictionary has noted that
_space_group.crystal_system has _symmetry_cell_setting as an alias, even
though _symmetry_cell_setting includes 'rhombohedral' as a possible value
whereas _space_group.crystal_system does not. As the set of possible
values is different, these two data items are not strictly equivalent.
Therefore, _symmetry_cell_setting should be removed as an alias of
_space_group.crystal_system.
However, we cannot simply drop _symmetry_cell_setting. For better or worse,
there are over 800 CIF files in the COD which have _symmetry_cell_setting
as 'rhombohedral' instead of the recommended '_space_group_crystal_system'
of 'trigonal' (one has '_space_group_crystal_system' of 'rhombohedral' as
well!). Of these, over 100 were produced in the last 5 years, although the
deprecation has been in place since 2005.
In order to interpret these "legacy" files, we need to preserve a
definition for _symmetry_cell_setting somewhere.
I suggest that we create an additional definition in the DDLm dictionary as
below. Note that
(1) I have deliberately not provided a new dataname in <category>.<object>
form, instead retaining the legacy dataname
(2) I have placed the dataname in the space_group category
(3) I have deliberately included the word deprecated in the object_id (this
is only relevant for dREL methods).
Please comment. The period for comments will be 3 weeks, after which this
change will be accepted unless there are outstanding issues.
James.
======================
save_symmetry_cell_setting
_definition.id '_symmetry_cell_setting'
_name.category_id 'space_group'
_name.object_id 'deprecated_cell_setting'
_description.text
;
This dataname is superseded by _space_group.crystal_system and is
retained here only to aid in interpreting
legacy archives. Do not use it.
Original definition: The cell setting for this space group symmetry.
;
_type.purpose State
_type.source Assigned
_type.container Single
_type.contents Code
loop_
_enumeration_set.state
triclinic
monoclinic
orthorhombic
tetragonal
trigonal
hexagonal
cubic
rhombohedral
save_
--
T +61 (02) 9717 9907
F +61 (02) 9717 3145
M +61 (04) 0249 4148
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.iucr.org/pipermail/coredmg/attachments/20170406/bb6af58f/attachment.html>
More information about the coreDMG
mailing list